{
  "checkedAt": "2026-09-20T18:33:12.838588+00:00",
  "project": "drug-transporter-ml",
  "baselineCommit": "4cd3f66a5ce7a41a71ad6ef10d1c1ce11188fe5b",
  "repairCommit": "a88149c3dbd70ae66c33538e0cf7d7deb5f9c8cc",
  "repairStatus": "Published review branch; unmerged draft PR",
  "reviewUrl": "https://github.com/KaustubhLall/drug-transporter-ml/pull/1",
  "platform": "Windows, CPython 3.12.14",
  "testCommand": "python -B -m unittest discover -s tests -v",
  "baseline": {
    "tests": 3,
    "failures": 3,
    "observed": [
      "Classifier receives a 4x3 matrix instead of the named 4x2 subset",
      "Zero results written for a three-combination run",
      "Ten results written for a twelve-combination run"
    ]
  },
  "repaired": {
    "tests": 10,
    "failures": 0,
    "testsRun": [
      "test_each_classifier_receives_only_named_feature_pair",
      "test_final_partial_batch_is_written",
      "test_full_batch_and_tail_are_written_once",
      "test_packaged_data_loads_outside_module_directory",
      "test_all_configs_create_networks_without_evolution",
      "test_checkpoint_creates_output_and_round_trips",
      "test_dataset_entrypoints_create_and_close_csv",
      "test_documented_cli_quits_successfully",
      "test_selection_entrypoint_one_synthetic_generation",
      "test_engineering_entrypoint_one_synthetic_generation"
    ],
    "rootIndependentRunSeconds": 8.583,
    "cleanSourceSnapshotTests": 10,
    "dependencyCheck": "No broken requirements found"
  },
  "datasets": [
    {
      "name": "OAT1OAT3Small.csv",
      "rows": 51,
      "columns": 32,
      "classes": 3
    },
    {
      "name": "OAT1OAT3Big.csv",
      "rows": 73,
      "columns": 32,
      "classes": 3
    },
    {
      "name": "OAT1OAT3OATP.csv",
      "rows": 137,
      "columns": 32,
      "classes": 6
    }
  ],
  "syntheticGA": {
    "entrypoints": [
      "FeatureSelectionGA.metabolite_small_dataset",
      "FeatureEngineering.metabolite_small_dataset"
    ],
    "rows": 6,
    "features": 32,
    "labels": [
      0,
      1,
      2,
      0,
      1,
      2
    ],
    "seed": 1729,
    "population": 2,
    "generations": 1,
    "randomForestTrees": 2,
    "minimumSpeciesSize": 1,
    "leaveOneOutFolds": 6,
    "graphics": "draw_net, plot_stats, plot_species intercepted; no visual acceptance"
  },
  "limits": [
    "No biomedical-data classifier fitting, exhaustive search, fresh holdout evaluation or paper reproduction",
    "Synthetic execution confirms software paths, not predictive performance",
    "Interactive plots and Graphviz executable not exercised",
    "Clean source snapshot reused the installed isolated environment; not a second dependency installation",
    "Historical scratch charts lack retained raw run provenance and have been withdrawn",
    "Default branch still contains the earlier implementation until the repair is reviewed and merged"
  ]
}